This dataset contains all the simulated data and the results of all the considered methods in the benchmark presented in "Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data" [Zaccaria & Raphael, 2018]. All the data in this dataset and the corresponding formats are fully described at https://github.com/raphael-group/hatchet-paper. The folder simulations which contains the entire dataset has been compressed with standard zip
Several minority variant callers have been developed to describe the minority variants sub-populatio...
Somatic variant identification from WGS data is a crucial step in the analysis of cancer genomes. Se...
<div><p>Whole-genome copy number analysis platforms, such as array comparative genomic hybridization...
The correct identification of copy-number aberrations (CNAs) in tumours can provide information for ...
Simulated tumour genomic sequencing data relating to the publication "Comprehensive and realistic si...
Recurrent genomic amplications and deletions characterize cancer genomes and contribute to disease ...
The process of occurrence of genomic aberrations over time in the genetic material of cancer cells r...
This repository contains all the data files for a simulated exome-sequencing study of 150 families a...
The past decade’s progress in next generation sequencing has drastically decreased the price of whol...
This repository contains the real and simulation datasets used in the paper "Benchmarking Computatio...
Summary:Copy number variation is an important and abundant source of variation in the human genome, ...
BACKGROUND: Using whole exome sequencing to predict aberrations in tumours is a cost effective alter...
Dataset contains results of multiply parallel calculations using the tugHall simulator. Output data ...
Motivation: Copy number abnormalities (CNAs) represent an important type of genetic mutation that ca...
Whole genome sequencing of matched tumor-normal sample pairs is becoming routine in cancer research....
Several minority variant callers have been developed to describe the minority variants sub-populatio...
Somatic variant identification from WGS data is a crucial step in the analysis of cancer genomes. Se...
<div><p>Whole-genome copy number analysis platforms, such as array comparative genomic hybridization...
The correct identification of copy-number aberrations (CNAs) in tumours can provide information for ...
Simulated tumour genomic sequencing data relating to the publication "Comprehensive and realistic si...
Recurrent genomic amplications and deletions characterize cancer genomes and contribute to disease ...
The process of occurrence of genomic aberrations over time in the genetic material of cancer cells r...
This repository contains all the data files for a simulated exome-sequencing study of 150 families a...
The past decade’s progress in next generation sequencing has drastically decreased the price of whol...
This repository contains the real and simulation datasets used in the paper "Benchmarking Computatio...
Summary:Copy number variation is an important and abundant source of variation in the human genome, ...
BACKGROUND: Using whole exome sequencing to predict aberrations in tumours is a cost effective alter...
Dataset contains results of multiply parallel calculations using the tugHall simulator. Output data ...
Motivation: Copy number abnormalities (CNAs) represent an important type of genetic mutation that ca...
Whole genome sequencing of matched tumor-normal sample pairs is becoming routine in cancer research....
Several minority variant callers have been developed to describe the minority variants sub-populatio...
Somatic variant identification from WGS data is a crucial step in the analysis of cancer genomes. Se...
<div><p>Whole-genome copy number analysis platforms, such as array comparative genomic hybridization...